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Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold-standard
Yu‐Yu Lin, Kersten Breuer, Dieter Weichenhan, Pascal Lafrenz, Agata Wilk, Marina Chepeleva, Oliver Mücke, Maximilian Schönung, Franziska Petermann, Philipp Kensche, Lena Weiser, Frank Thommen, Gideon Giacomelli, Karl Nordstroem, Edahi Gonzales-Avalos, Angelika Merkel, Helene Kretzmer, Jonas Fischer, Stephen Krämer, Murat Iskar, Stephan Wolf, Ivo Buchhalter, Manel Esteller, Chris Lawerenz, Sven Twardziok, Marc Zapatka, Volker Hovestadt, Matthias Schlesner, Marcel H. Schulz, Steve Hoffmann, Clarissa Gerhäuser, Jörn Walter, Mark Hartmann, Daniel B. Lipka, Yassen Assenov, Christoph Bock, Christoph Plass, Réka Tóth, Pavlo Lutsik (2024). Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold-standard. , DOI: https://doi.org/10.1101/2024.09.16.609142.
Preprint75 days agoGenome-Wide DNA Methylation Profiling in Early Stage I Lung Adenocarcinoma Reveals Predictive Aberrant Methylation in the Promoter Region of the Long Noncoding RNA PLUT: An Exploratory Study
Soo‐Zin Kim‐Wanner, Yassen Assenov, Mridul Nair, Dieter Weichenhan, Axel Benner, Natália Becker, Katharina Landwehr, Ruprecht Kuner, Holger Sültmann, Manel Esteller, Ina Koch, Michael Lindner, Michael Meister, Michael Thomas, Matthias Bieg, Ursula Klingmüller, Matthias Schlesner, Arne Warth, Benedikt Brors, Erhard Seifried, Halvard Bönig, Christoph Plass, Angela Risch, Thomas Muley (2020). Genome-Wide DNA Methylation Profiling in Early Stage I Lung Adenocarcinoma Reveals Predictive Aberrant Methylation in the Promoter Region of the Long Noncoding RNA PLUT: An Exploratory Study. , 15(8), DOI: https://doi.org/10.1016/j.jtho.2020.03.023.
Article75 days agoGenome-Wide DNA Methylation Profiling in Early Stage I Lung Adenocarcinoma Reveals Predictive Aberrant Methylation in the Promoter Region of the Long Noncoding RNA PLUT: An Exploratory Study
Soo‐Zin Kim‐Wanner, Yassen Assenov, Mridul Nair, Dieter Weichenhan, Axel Benner, Natália Becker, Katharina Landwehr, Ruprecht Kuner, Holger Sültmann, Manel Esteller, Ina Koch, Michael Lindner, Michael Meister, Michael Thomas, Matthias Bieg, Ursula Klingmüller, Matthias Schlesner, Arne Warth, Benedikt Brors, Erhard Seifried, Halvard Bönig, Christoph Plass, Angela Risch, Thomas Muley (2020). Genome-Wide DNA Methylation Profiling in Early Stage I Lung Adenocarcinoma Reveals Predictive Aberrant Methylation in the Promoter Region of the Long Noncoding RNA PLUT: An Exploratory Study. , 15(8), DOI: https://doi.org/10.1016/j.jtho.2020.03.023.
Article75 days agoQuantitative comparison of DNA methylation assays for biomarker development and clinical applications
Christoph Bock, Florian Halbritter, Francisco javier García Carmona, Sascha Tierling, Paul Datlinger, Yassen Assenov, María Berdasco, Anke Bergmann, Keith Booher, Florence Busato, Mihaela Campan, Christina Dahl, Christina M. Dahmcke, Dinh Diep, Agustín F. Fernández, Clarissa Gerhäuser, Andrea Haake, Katharina Heilmann, Thomas Holcomb, Dianna Hussmann, Mitsuteru Ito, Ruth Kläver, Martin Kreutz, Marta Kulis, Virginia López, Shalima S. Nair, Dirk S. Paul, Nongluk Plongthongkum, Wenjia Qu, Ana C. Queirós, Frank Reinicke, Guido Sauter, Thorsten Schlomm, Aaron L. Statham, Clare Stirzaker, Ruslan Strogantsev, Rocío G. Urdinguio, Kimberly Walter, Dieter Weichenhan, Daniel J. Weisenberger, Stephan Beck, Susan J. Clark, Manel Esteller, Anne C. Ferguson‐Smith, Mario F. Fraga, Per Guldberg, Lise Lotte Hansen, Peter W. Laird, José I. Martı́n-Subero, Anders O.H. Nygren, Ralf Peist, Christoph Plass, David S. Shames, Reiner Siebert, Xueguang Sun, Jörg Tost, Jörn Walter, Kun Zhang (2016). Quantitative comparison of DNA methylation assays for biomarker development and clinical applications. , 34(7), DOI: https://doi.org/10.1038/nbt.3605.
Article75 days ago