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Harnessing sequencing data for porcine reproductive and respiratory syndrome virus (PRRSV): tracking genetic evolution dynamics and emerging sequences in US swine industry
Srijita Chandra, Guilherme Cezar, Kinath Rupasinghe, Edison Magalhães, Gustavo S Silva, Marcelo Nunes de Almeida, Bret Crim, Eric Burrough, Phillip C. Gauger, Darin Madson, Joseph Thomas, Michael Zeller, Jianqiang Zhang, Rodger Main, Albert Rovira, Mary Thurn, Paulo Lages, Cesar A. Corzo, Matthew Sturos, Kimberly VanderWaal, Hemant Naikare, Franco Matias-Ferreyra, Rob McGaughey, Jamie Retallick, Sara McReynolds, Jordan Gebhardt, Angela Pillatzki, Jon Greseth, Darren Kersey, Travis Clement, Jane Christopher‐Hennings, Beth E. Thompson, J. R. Perkins, Melanie Prarat, Dennis Summers, Craig W. Bowen, Joseph Boyle, Kenitra Hendrix, James Lyons, Klára Werling, Andréia G. Arruda, Mark Schwartz, Paul Yeske, Deborah Murray, Brooke N. Mason, Peter M. Schneider, Samuel Copeland, Luc Dufresne, Daniel Boykin, Corrine Fruge, W. AINSLIE HOLLIS, Rebecca Robbins, Thomas Petznick, Kurt Kuecker, Lauren Glowzenski, Megan C. Niederwerder, Xiaoqiu Huang, Daniel Linhares, Giovani Trevisan (2025). Harnessing sequencing data for porcine reproductive and respiratory syndrome virus (PRRSV): tracking genetic evolution dynamics and emerging sequences in US swine industry. , 12, DOI: https://doi.org/10.3389/fvets.2025.1571020.
Article73 days agoPRRSV-2 variant classification: a dynamic nomenclature for enhanced monitoring and surveillance
Jianqiang Zhang, Michael Zeller, Giovani Trevisan, Stephanie Rossow, Mark Schwartz, Daniel Linhares, Derald Holtkamp, João Paulo Herrera da Silva, Cesar A. Corzo, Julia P. Baker, Tavis K. Anderson, Dennis N. Makau, Igor A. D. Paploski, Kimberly VanderWaal, Nakarin Pamornchainavakul, Mariana Kikuti (2025). PRRSV-2 variant classification: a dynamic nomenclature for enhanced monitoring and surveillance. , DOI: https://doi.org/10.1128/msphere.00709-24.
Article73 days agoPhylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility
Kimberly VanderWaal, Nakarin Pamornchainvakul, Mariana Kikuti, Daniel Linhares, Giovani Trevisan, Jianqiang Zhang, Tavis K. Anderson, Michael Zeller, Stephanie Rossow, Derald Holtkamp, Dennis N. Makau, Cesar A. Corzo, Igor A. D. Paploski (2024). Phylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility. , DOI: https://doi.org/10.1101/2024.05.13.593920.
Preprint73 days agoPRRSV-2 variant classification: a dynamic nomenclature for enhanced monitoring and surveillance
Kimberly VanderWaal, Nakarin Pamornchainavakul, Mariana Kikuti, Jianqiang Zhang, Michael Zeller, Giovani Trevisan, Stephanie Rossow, Mark Schwartz, Daniel Linhares, Derald Holtkamp, João Paulo Herrera da Silva, Cesar A. Corzo, Julia P. Baker, Tavis K. Anderson, Dennis N. Makau, Igor A. D. Paploski (2024). PRRSV-2 variant classification: a dynamic nomenclature for enhanced monitoring and surveillance. , DOI: https://doi.org/10.1101/2024.08.20.608841.
Preprint73 days agoPhylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility
Kimberly VanderWaal, Nakarin Pamornchainavakul, Mariana Kikuti, Daniel Linhares, Giovani Trevisan, Jianqiang Zhang, Tavis K. Anderson, Michael Zeller, Stephanie Rossow, Derald Holtkamp, Dennis N. Makau, Cesar A. Corzo, Igor A. D. Paploski (2024). Phylogenetic-based methods for fine-scale classification of PRRSV-2 ORF5 sequences: a comparison of their robustness and reproducibility. , 4, DOI: https://doi.org/10.3389/fviro.2024.1433931.
Article73 days ago