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  5. Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR

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Article
English
2021

Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR

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English
2021
Methods and Protocols
Vol 4 (1)
DOI: 10.3390/mps4010017

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Davey L Jones
Davey L Jones

Bangor University

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Kata Farkas
Luke S. Hillary
Jamie Thorpe
+5 more

Abstract

Wastewater-based epidemiology has become an important tool for the surveillance of SARS-CoV-2 outbreaks. However, the detection of viruses in sewage is challenging and to date there is no standard method available which has been validated for the sensitive detection of SARS-CoV-2. In this paper, we describe a simple concentration method based on polyethylene glycol (PEG) precipitation, followed by RNA extraction and a one-step quantitative reverse transcription PCR (qRT-PCR) for viral detection in wastewater. PEG-based concentration of viruses is a simple procedure which is not limited by the availability of expensive equipment and has reduced risk of disruption to consumable supply chains. The concentration and RNA extraction steps enable 900-1500× concentration of wastewater samples and sufficiently eliminates the majority of organic matter, which could inhibit the subsequent qRT-PCR assay. Due to the high variation in the physico-chemical properties of wastewater samples, we recommend the use of process control viruses to determine the efficiency of each step. This procedure enables the concentration and the extraction the DNA/RNA of different viruses and hence can be used for the surveillance of different viral targets for the comprehensive assessment of viral diseases in a community.

How to cite this publication

Kata Farkas, Luke S. Hillary, Jamie Thorpe, David I. Walker, James Lowther, James E. McDonald, Shelagh K. Malham, Davey L Jones (2021). Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR. Methods and Protocols, 4(1), pp. 17-17, DOI: 10.3390/mps4010017.

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Publication Details

Type

Article

Year

2021

Authors

8

Datasets

0

Total Files

0

Language

English

Journal

Methods and Protocols

DOI

10.3390/mps4010017

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