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The last 5 uploaded publications
CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
Yongchao Liu, Douglas Leslie Maskell, Bertil Schmidt (2009). CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units. BMC Research Notes, 2(1), pp. 73-73, DOI: 10.1186/1756-0500-2-73.
Article287 days agoMSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
Yongchao Liu, Bertil Schmidt, Douglas Leslie Maskell (2010). MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities. Bioinformatics, 26(16), pp. 1958-1964, DOI: 10.1093/bioinformatics/btq338.
Article287 days agoCUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
Yongchao Liu, Bertil Schmidt, Douglas Leslie Maskell (2010). CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions. BMC Research Notes, 3(1), DOI: 10.1186/1756-0500-3-93.
Article287 days agoCUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform
Yongchao Liu, Bertil Schmidt, Douglas Leslie Maskell (2012). CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform. Bioinformatics, 28(14), pp. 1830-1837, DOI: 10.1093/bioinformatics/bts276.
Article287 days agoMSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA
Yongchao Liu, Bertil Schmidt, Douglas Leslie Maskell (2009). MSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA. , 4, pp. 121-128, DOI: 10.1109/asap.2009.14.
Article287 days ago