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The last 5 uploaded publications
Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering
Thomas Eng, Deepanwita Banerjee, Javier Menasalvas, Yan Chen, Jennifer Gin, Hemant Choudhary, Edward E. K. Baidoo, Jian-Hua Chen, Axel Ekman, Ramu Kakumanu, Yuzhong Liu, Alex Codik, Carolyn A. Larabell, John M. Gladden, Blake A. Simmons, Jay D Keasling, Christopher J. Petzold, Aindrila Mukhopadhyay (2023). Maximizing microbial bioproduction from sustainable carbon sources using iterative systems engineering. , 42(9), DOI: https://doi.org/10.1016/j.celrep.2023.113087.
Article121 days agoRB-TnSeq elucidates dicarboxylic acid specific catabolism in β-proteobacteria for improved plastic monomer upcycling
Allison N. Pearson, Julie Lynch, Cindy Ho, Graham A. Hudson, Jacob B. Roberts, Javier Menasalvas, Aaron A. Vilchez, Matthew R. Incha, Matthias Schmidt, Aindrila Mukhopadhyay, Adam M. Deutschbauer, Mitchell G. Thompson, Patrick M. Shih, Jay D Keasling (2025). RB-TnSeq elucidates dicarboxylic acid specific catabolism in β-proteobacteria for improved plastic monomer upcycling. , DOI: https://doi.org/10.1101/2025.02.21.639450.
Preprint121 days agoRB-TnSeq elucidates dicarboxylic-acid-specific catabolism in β-proteobacteria for improved plastic monomer upcycling
Allison N. Pearson, Julie Lynch, Cindy Ho, Graham A. Hudson, Jacob B. Roberts, Javier Menasalvas, Aaron A. Vilchez, Matthew R. Incha, Matthias Schmidt, Aindrila Mukhopadhyay, Adam M. Deutschbauer, Mitchell G. Thompson, Patrick M. Shih, Jay D Keasling (2025). RB-TnSeq elucidates dicarboxylic-acid-specific catabolism in β-proteobacteria for improved plastic monomer upcycling. , 91(10), DOI: https://doi.org/10.1128/aem.00924-25.
Article121 days agoEnsemble and Iterative Engineering for Maximized Bioconversion to the Blue Pigment, Indigoidine from Non-Canonical Sustainable Carbon Sources
Thomas Eng, Deepanwita Banerjee, Javier Menasalvas, Yan Chen, Jennifer Gin, Hemant Choudhary, Edward E. K. Baidoo, Jian-Hua Chen, Axel Ekman, Ramu Kakumanu, Yuzhong Liu, Alex Codik, Carolyn A. Larabell, John M. Gladden, Blake A. Simmons, Jay D Keasling, Christopher J. Petzold, Aindrila Mukhopadhyay (2023). Ensemble and Iterative Engineering for Maximized Bioconversion to the Blue Pigment, Indigoidine from Non-Canonical Sustainable Carbon Sources. , DOI: https://doi.org/10.1101/2023.03.16.532821.
Preprint121 days ago