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The last 5 uploaded publications
Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models
Jie Zhang, Søren D. Petersen, Tijana Radivojević, Andrés Ramirez, Andrés M. Perez, Eduardo Abeliuk, Benjamín J. Sánchez, Zachary Costello, Yu Chen, Mike Fero, Héctor García Martín, Jens Nielsen, Jay D Keasling, Michael K. Jensen (2019). Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models. , DOI: https://doi.org/10.1101/858464.
Preprint26 days agoteemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering
Søren D. Petersen, Lucas Levassor, Christine M. Pedersen, Jan Madsen, Lea G. Hansen, Jie Zhang, Ahmad K. Haidar, Rasmus John Normand Frandsen, Jay D Keasling, Tilmann Weber, Nikolaus Sonnenschein, Michael K. Jensen (2024). teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering. , 20(3), DOI: https://doi.org/10.1371/journal.pcbi.1011929.
Article26 days agoModular 5′-UTR hexamers for context-independent tuning of protein expression in eukaryotes
Søren D. Petersen, Jie Zhang, Jae Seong Lee, Tadas Jakočiūnas, Lise Marie Grav, Helene Faustrup Kildegaard, Jay D Keasling, Michael K. Jensen (2018). Modular 5′-UTR hexamers for context-independent tuning of protein expression in eukaryotes. , 46(21), DOI: https://doi.org/10.1093/nar/gky734.
Article26 days agoCombining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism
Jie Zhang, Søren D. Petersen, Tijana Radivojević, Andrés Ramirez, Andrés Pérez-Manríquez, Eduardo Abeliuk, Benjamín J. Sánchez, Zak Costello, Yu Chen, M.J. Fero, Héctor García Martín, Jens Nielsen, Jay D Keasling, Michael K. Jensen (2020). Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism. , 11(1), DOI: https://doi.org/10.1038/s41467-020-17910-1.
Article26 days ago