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The last 5 uploaded publications
The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
William Morrell, Garrett W. Birkel, Mark Forrer, Teresa Díaz-Faes López, Tyler W. H. Backman, Michael Dussault, Christopher J. Petzold, Edward E. K. Baidoo, Zak Costello, David Ando, Jorge Alonso-Gutiérrez, Kevin W. George, Aindrila Mukhopadhyay, Ian Vaino, Jay D Keasling, Paul D. Adams, Nathan J. Hillson, Héctor García Martín (2017). The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization. , 6(12), DOI: https://doi.org/10.1021/acssynbio.7b00204.
Article27 days agoThe JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism
Garrett W. Birkel, Amit Ghosh, Vinay Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D Keasling, Héctor García Martín (2017). The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism. , 18(1), DOI: https://doi.org/10.1186/s12859-017-1615-y.
Article27 days agoMachine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8(1), DOI: https://doi.org/10.1038/s42003-025-08039-2.
Article27 days agoA polyketide-based biosynthetic platform for diols, amino alcohols and hydroxy acids
Qingyun Dan, Yan Chiu, Namil Lee, J.H. Pereira, Behzad Rad, Xixi Zhao, Kai Deng, Yinghui Rong, Chunjun Zhan, Yan Chen, Seokjung Cheong, Chenyi Li, Jennifer Gin, Andria V. Rodrigues, Trent R. Northen, Tyler W. H. Backman, Edward E. K. Baidoo, Christopher J. Petzold, Paul D. Adams, Jay D Keasling (2025). A polyketide-based biosynthetic platform for diols, amino alcohols and hydroxy acids. , 8(2), DOI: https://doi.org/10.1038/s41929-025-01299-5.
Article27 days agoAuthor Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida
Apostolos Zournas, Matthew R. Incha, Tijana Radivojević, Vincent Blay, Jose Manuel Martí, Zak Costello, Matthias Schmidt, Tan Chung, Mitchell G. Thompson, Allison S. Pearson, Patrick C. Kinnunen, Thomas Eng, Christopher E. Lawson, Paul D. Adams, Tadeusz L. Ogorzalek, Nurgul Kaplan, Mark Forrer, Tyler W. H. Backman, Aindrila Mukhopadhyay, Nathan J. Hillson, Jay D Keasling, Héctor García Martín (2025). Author Correction: Machine learning-led semi-automated medium optimization reveals salt as key for flaviolin production in Pseudomonas putida. , 8 (1), DOI: https://doi.org/10.1038/s42003-025-08141-5.
Corrigendum27 days ago